phaseolus consulting

(215) 821-6261ยท mark@phaseolus.biz

Phaseolus consulting can help you with

  • the analysis and visualization of genomic and related data
  • text mining, especially classification
  • biomedical semantics and linked data


additional appointments

ontologist

Institute for biomedical informatics,
University of Pennsylvania
  January 2017- Present

Education

University of the sciences

MS, Biofinformatics

GPA: 4.0

September 2006 - May 2009

middlebury college

BA, biochemistry
September 1988 - May 1992

Skills

Programming Languages & Tools
  • R, RStudio, Shiny, GGplot, BioConductor
  • rsem, STAR, DEseq2, BioConductor
  • JBrowse
  • Qiime2
  • Python
  • Scala, Eclipse
  • RDF, OWL, SPARQL, OntoText GraphDB
  • Protege, TopBraid Composer
  • Relational databases, esp. MySQL
  • Linux, BASH
  • AWS
  • Inkscape
  • Markdown